Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000239.1_64100_70057_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64100 - 70057

Intron Length:

5958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGTG

5'SS Class:

strong_major

3'SS Sequence:

ACCTTGGATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACAGAT

U12 Branch Point Sequence:

TGTAAGCTAACA

Flanking Amino Acid:

GSGFFSEVYKVTQAADCKVM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

0.9

72.3

37.6

Major BPS

57.5

0.19

52.7

34.2

Major PPT

63.8

0.31

1.1

54.1

44.5

Minor 5ss

33.4

-1.9

3.6

46.6

48.7

Minor BPS

44.2

-0.4

2.4

63.11

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007334

Chromosome:

PEDO01000239.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007610

57402 - 70297

12896

ENSAPLT00000021740

45299 - 70257

24959