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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_125412_149538_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125412 - 149538
Intron Length:
24127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTATACA
Flanking Amino Acid:
MSKMRKKMRLLLFL
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
71.4
0.48
1
64.1
41.2
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
55.8
0.18
2
71.79
40.2

Associated Gene:

Gene:
STS
Ensembl Gene ID:
ENSAPLG00000009954
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010370
125398 - 239448
114051