Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_137380_149538_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

137380 - 149538

Intron Length:

12159

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTCAGT

5'SS Class:

major

3'SS Sequence:

TCTTATACACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TGTTCTTATACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

67.2

43.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

71.4

0.48

64.1

41.2

Minor 5ss

47.3

-0.3

2.6

43.8

Minor BPS

55.8

0.18

71.79

40.2

Associated Gene:

Gene:

STS

Ensembl Gene ID:

ENSAPLG00000009954

Chromosome:

PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022270

135922 - 239448

103527