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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_149692_152577_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149692 - 152577
Intron Length:
2886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
TTTTTCCCAATT
Flanking Amino Acid:
DLGCYGNRTLRTPYIDRLAK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
61.1
0.43
1.9
84.67
35.9

Associated Gene:

Gene:
STS
Ensembl Gene ID:
ENSAPLG00000009954
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023083
126046 - 239448
113403
ENSAPLT00000022270
135922 - 239448
103527
ENSAPLT00000021443
125660 - 239448
113789
ENSAPLT00000010370
125398 - 239448
114051
ENSAPLT00000033989
126046 - 239448
113403