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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_152700_155246_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152700 - 155246
Intron Length:
2547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATAT
Flanking Amino Acid:
FLTGRYPIRSGMAAFSRVGV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
72.3
0.5
0.9
71
38.9
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
62.9
0.48
2
86.88
38.3

Associated Gene:

Gene:
STS
Ensembl Gene ID:
ENSAPLG00000009954
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022270
135922 - 239448
103527
ENSAPLT00000021443
125660 - 239448
113789
ENSAPLT00000010370
125398 - 239448
114051
ENSAPLT00000033989
126046 - 239448
113403
ENSAPLT00000023083
126046 - 239448
113403