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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_159903_166822_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159903 - 166822
Intron Length:
6920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GCTTTTGTCATT
Flanking Amino Acid:
LTTEAVQFIGRNTDVPFLLV
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
44.1
-0.3
2.3
62.87
42.6

Associated Gene:

Gene:
STS
Ensembl Gene ID:
ENSAPLG00000009954
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010370
125398 - 239448
114051
ENSAPLT00000033989
126046 - 239448
113403
ENSAPLT00000023083
126046 - 239448
113403
ENSAPLT00000022270
135922 - 239448
103527
ENSAPLT00000021443
125660 - 239448
113789