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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_202198_205480_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
202198 - 205480
Intron Length:
3283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTACTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTATTCTGACTT
Flanking Amino Acid:
KLAGAQLPYDRIIDGHDLMP
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.4
0.71
0.8
80.9
30
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
57.8
0.32
1.7
77.16
39.6

Associated Gene:

Gene:
STS
Ensembl Gene ID:
ENSAPLG00000009954
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021443
125660 - 239448
113789
ENSAPLT00000010370
125398 - 239448
114051
ENSAPLT00000033989
126046 - 239448
113403
ENSAPLT00000023083
126046 - 239448
113403
ENSAPLT00000022270
135922 - 239448
103527