About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_205603_239065_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
205603 - 239065
Intron Length:
33463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTAAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTGACT
Flanking Amino Acid:
LNAVRWHPGNSESVWKAFFF
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.8
0.49
1
63.5
41.7
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
74.3
0.84
1.5
89.69
34

Associated Gene:

Gene:
STS
Ensembl Gene ID:
ENSAPLG00000009954
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022270
135922 - 239448
103527
ENSAPLT00000021443
125660 - 239448
113789
ENSAPLT00000010370
125398 - 239448
114051
ENSAPLT00000033989
126046 - 239448
113403
ENSAPLT00000023083
126046 - 239448
113403