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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_30700_32516_F

Intron Information:

Intron Rank:
135727
Intron Class:
major
Intron Phase:
Intron Coordinates:
30700 - 32516
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTGCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTCTATTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
65.3
0.34
1
59.7
41.6
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
48.3
-0
1.9
66.63
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023071
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040155
30682 - 32945
2264
ENSAPLT00000031500
30623 - 33840
3218