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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_32652_32769_F

Intron Information:

Intron Rank:
135730
Intron Class:
major
Intron Phase:
Intron Coordinates:
32652 - 32769
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
CCTAGCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
81.2
0.7
0.9
77.7
40.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
44.2
-0.3
2.1
61.14
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023071
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040155
30682 - 32945
2264