Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_481414_484577_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

481414 - 484577

Intron Length:

3164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTTAGTAAT

5'SS Class:

major

3'SS Sequence:

CTCTCTGTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

GATATATTAATT

Flanking Amino Acid:

KKNFIRKKKECCLWPT*

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

80.9

32.8

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

81.2

0.7

0.8

75.8

32.7

Minor 5ss

33.9

-1.8

2.6

41.2

Minor BPS

57.2

0.3

1.6

71.89

38.6

Associated Gene:

Gene:

PNPLA4

Ensembl Gene ID:

ENSAPLG00000010047

Chromosome:

PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042157

481239 - 503981

22743

ENSAPLT00000010468

481239 - 502848

21610