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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_485484_490370_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
485484 - 490370
Intron Length:
4887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TACTTTTTATTT
Flanking Amino Acid:
GMKPVEYKGEKWVDGGLTNG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
0.9
75.3
34
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
58.6
0.35
1.5
71.82
40.2

Associated Gene:

Gene:
PNPLA4
Ensembl Gene ID:
ENSAPLG00000010047
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010468
481239 - 502848
21610
ENSAPLT00000042157
481239 - 503981
22743
ENSAPLT00000040397
483529 - 503981
20453
ENSAPLT00000040034
481239 - 503981
22743