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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_490437_492464_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
490437 - 492464
Intron Length:
2028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCCCCTTCATT
Flanking Amino Acid:
SFASREDLIKVLLASSFIPV
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
87
0.83
0.6
81.2
30.9
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
65.1
0.56
1.8
81.08
41.1

Associated Gene:

Gene:
PNPLA4
Ensembl Gene ID:
ENSAPLG00000010047
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042157
481239 - 503981
22743
ENSAPLT00000040397
483529 - 503981
20453
ENSAPLT00000040034
481239 - 503981
22743
ENSAPLT00000010468
481239 - 502848
21610