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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_492601_492779_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
492601 - 492779
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTTAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATGTTTACCA
Flanking Amino Acid:
TPGYDFMKRLREGIESILPS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.8
41.3
Major BPS
80
0.75
1
78.6
31
Major PPT
83.1
0.74
0.8
76.8
37.4
Minor 5ss
36.5
-1.5
3
52.2
44.2
Minor BPS
50.6
0.02
2
64.97
41.6

Associated Gene:

Gene:
PNPLA4
Ensembl Gene ID:
ENSAPLG00000010047
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042157
481239 - 503981
22743
ENSAPLT00000040397
483529 - 503981
20453
ENSAPLT00000040034
481239 - 503981
22743
ENSAPLT00000010468
481239 - 502848
21610