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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_492875_497342_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
492875 - 497342
Intron Length:
4468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTCCTTAATG
Flanking Amino Acid:
VLLTVPDNIEKCEQFTYGFA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.2
0.86
0.8
85.7
33.4
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
77.8
0.73
1.2
73.7
39.1

Associated Gene:

Gene:
PNPLA4
Ensembl Gene ID:
ENSAPLG00000010047
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042157
481239 - 503981
22743
ENSAPLT00000040397
483529 - 503981
20453
ENSAPLT00000040034
481239 - 503981
22743
ENSAPLT00000010468
481239 - 502848
21610