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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_497528_502721_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
497528 - 502721
Intron Length:
5194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TTTATTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTGTCCTGACTG
Flanking Amino Acid:
ECDGKQRALEAKMKHINLSF
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
84.9
0.79
0.8
80.3
31.7
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
55.7
0.04
1.8
63.95
44.3

Associated Gene:

Gene:
PNPLA4
Ensembl Gene ID:
ENSAPLG00000010047
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042157
481239 - 503981
22743
ENSAPLT00000040397
483529 - 503981
20453
ENSAPLT00000040034
481239 - 503981
22743