Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_526894_528046_R

Intron Information:

Intron Rank:

151088

Intron Class:

major

Intron Phase:

Intron Coordinates:

526894 - 528046

Intron Length:

1153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

CTTTGTATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TTTCTTTGTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.51

1.3

70.6

41.3

Major BPS

84.8

0.86

85.7

34.9

Major PPT

83.3

0.75

0.9

77.5

35.5

Minor 5ss

37.4

-1.4

50.9

Minor BPS

49.4

0.04

1.7

73.39

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028792

Chromosome:

PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040381

525931 - 528387

2457