About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000240.1_87815_98019_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87815 - 98019
Intron Length:
10205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATACATATAATG
Flanking Amino Acid:
KIFPTAELMPGVDKLIRHLH
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.9
0.76
0.8
77.8
36
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
45.5
-0.4
1.7
50.35
37.3

Associated Gene:

Gene:
PUDP
Ensembl Gene ID:
ENSAPLG00000009897
Chromosome:
PEDO01000240.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010297
46286 - 125639
79354