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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000247.1_901_1286_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

901 - 1286

Intron Length:

386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGGC

5'SS Class:

major

3'SS Sequence:

GTCCCCTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

GCTCACTTAACG

Flanking Amino Acid:

MKVKRNPPKTGKAGEYGFVG

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.3

72.7

38.2

Major BPS

71.6

0.54

33.1

Major PPT

78.9

0.65

0.8

72.5

32.2

Minor 5ss

28.4

-2.5

35.8

40.9

Minor BPS

61.5

0.22

1.7

44.2

Associated Gene:

Gene:

HOXA1

Ensembl Gene ID:

ENSAPLG00000019701

Chromosome:

PEDO01000247.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040812

21 - 2692

2672