About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000259.1_1934_2147_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1934 - 2147

Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACCGGCC

5'SS Class:
major

3'SS Sequence:
TTCCTGCCCCCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGTTTAC

U12 Branch Point Sequence:
CCAGGTTTACCA

Flanking Amino Acid:
SHGHRDIVQKLIQFKADINA

Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
65.5
0.37
1.2
60.6
40.1

Major BPS
53.6
0.09
1.4
49.1
46

Major PPT
74
0.54
0.8
65.4
36.2

Minor 5ss
35
-1.7
3.7
51
45.8

Minor BPS
42.5
-0.5
2
46.6
43.9

Associated Gene:

Gene:
ILK

Ensembl Gene ID:

Chromosome:
PEDO01000259.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 5360
5340

21 - 5360
5340