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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000259.1_1934_2395_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1934 - 2395
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
AGGGACTCATTT
Flanking Amino Acid:
SHGHRDIVQKDLVGNGALVS
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
83.1
0.74
0.7
81.4
23.6
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
41.1
-0.6
1.9
52.27
42.6

Associated Gene:

Gene:
ILK
Ensembl Gene ID:
ENSAPLG00000009542
Chromosome:
PEDO01000259.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045608
21 - 5360
5340