Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000259.1_3411_3611_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3411 - 3611

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAG

U12 Branch Point Sequence:

AGGGCTGTCACT

Flanking Amino Acid:

RDFNEEYPKLRIFSHPNVLP

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

58.3

0.21

1.7

71.4

45.1

Major PPT

83.3

0.75

0.8

77.3

30.6

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

-0.5

2.3

58.09

45.3

Associated Gene:

Gene:

ILK

Ensembl Gene ID:

ENSAPLG00000009542

Chromosome:

PEDO01000259.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045608

21 - 5360

5340

ENSAPLT00000031471

21 - 5360

5340

ENSAPLT00000009972

21 - 5360

5340