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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000259.1_4097_4167_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4097 - 4167
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
GCTGCTATAACC
Flanking Amino Acid:
RHHLNSRSIMIDEDMTARIS
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
75.9
0.58
0.8
73
31.9
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
54
0.11
1.7
63.6
42.1

Associated Gene:

Gene:
ILK
Ensembl Gene ID:
ENSAPLG00000009542
Chromosome:
PEDO01000259.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031471
21 - 5360
5340
ENSAPLT00000009972
21 - 5360
5340
ENSAPLT00000045608
21 - 5360
5340