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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000259.1_4268_4358_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4268 - 4358
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GGATTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTGTGCTGGATT
Flanking Amino Acid:
MYAPAWVAPEALQKKPEEIN
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
79
0.72
1
69
38.9
Major PPT
70.7
0.47
1
62.9
39.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
48.5
-0
2
67.05
44.5

Associated Gene:

Gene:
ILK
Ensembl Gene ID:
ENSAPLG00000009542
Chromosome:
PEDO01000259.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031471
21 - 5360
5340
ENSAPLT00000009972
21 - 5360
5340
ENSAPLT00000045608
21 - 5360
5340