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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000259.1_553_684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
553 - 684
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGAGCT
5'SS Class:
major
3'SS Sequence:
CCCCTCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
GTGCCCTTACAA
Flanking Amino Acid:
LRLSSGQPGRARAAMDDIFT
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
59.7
39.5
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
78.1
0.63
0.7
72.1
26
Minor 5ss
26.1
-2.7
3.4
30.7
42.7
Minor BPS
53
0.09
1.8
63.11
42.6

Associated Gene:

Gene:
ILK
Ensembl Gene ID:
ENSAPLG00000009542
Chromosome:
PEDO01000259.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009972
21 - 5360
5340