Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000291.1_1266_2308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1266 - 2308

Intron Length:

1043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGGGCA

5'SS Class:

major

3'SS Sequence:

CATCTCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TTGCCCCCATCT

Flanking Amino Acid:

DRNTSRYVIRIDQDGLTLPE

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

62.8

37.7

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

71.7

0.49

0.8

62.2

34.3

Minor 5ss

23.6

-3

3.2

21.4

37.4

Minor BPS

46.7

-0.1

2.1

70.87

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014500

Chromosome:

PEDO01000291.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015136

52 - 6315

6264