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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000291.1_2378_2448_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2378 - 2448
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
ACTCACGGAGCT
Flanking Amino Acid:
YLGQDEESEKILAAYRVFME
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
64.9
0.37
1
67
29.8
Major PPT
67.9
0.4
1
63
37.2
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
39.3
-0.7
2.2
58.02
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014500
Chromosome:
PEDO01000291.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015136
52 - 6315
6264