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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000291.1_3555_3868_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3555 - 3868
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCACGTCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
GGGGCCTGATCC
Flanking Amino Acid:
VSDLIRMTPSRILHNYMLWR
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
59.4
0.21
1
50.3
38
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46.5
-0.2
1.8
52.86
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014500
Chromosome:
PEDO01000291.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015136
52 - 6315
6264