Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000291.1_4978_5093_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4978 - 5093

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTGGGTATT

5'SS Class:

weak_major

3'SS Sequence:

TCTCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTCCAT

U12 Branch Point Sequence:

GTCCCCAGCACT

Flanking Amino Acid:

KKIRQEVDKSAWLLPPQALN

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.3

0.22

1.4

68.8

43.8

Major BPS

0.37

1.3

76.1

Major PPT

86.2

0.81

0.7

80.7

24.5

Minor 5ss

35.8

-1.6

3.2

45.8

42.8

Minor BPS

44.4

-0.3

2.1

64.42

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014500

Chromosome:

PEDO01000291.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015136

52 - 6315

6264