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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000298.1_443_3000_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
443 - 3000
Intron Length:
2558

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCACCCCCC
5'SS Class:
weak_major
3'SS Sequence:
GGGGTCTCGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ACGTCCTTATCG
Flanking Amino Acid:
AIATVMGPLRMLAMEPYVLL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.4
53.1
42.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
44
-0.3
1.7
42.3
43.3
Minor 5ss
35.7
-1.6
4.3
55.6
42.1
Minor BPS
61.2
0.21
1.7
61.44
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028348
Chromosome:
PEDO01000298.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029931
378 - 3214
2837