Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_12535_12611_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12535 - 12611

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGGGC

5'SS Class:

major

3'SS Sequence:

GCCGTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCAGGAC

U12 Branch Point Sequence:

GCGCTCAGGACC

Flanking Amino Acid:

RGQVIGFISQDPVLFGTTIM

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

61.4

37.5

Major BPS

44.9

-0.3

1.4

39.4

40.4

Major PPT

61.5

0.26

0.9

52.8

36.9

Minor 5ss

22.7

-3.1

3.5

31.5

43.1

Minor BPS

-0.6

1.6

45.17

36.8

Associated Gene:

Gene:

ABCB8

Ensembl Gene ID:

ENSAPLG00000022316

Chromosome:

PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032963

11821 - 16185

4365

ENSAPLT00000027165

4130 - 16730

12601