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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_13323_13406_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13323 - 13406
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATGAGCT
Flanking Amino Acid:
SFLVASQTVQRSMANISILF
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
73.8
0.54
0.7
69.4
24.5
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
53.4
0.18
2
80.41
40.5

Associated Gene:

Gene:
ABCB8
Ensembl Gene ID:
ENSAPLG00000022316
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033034
11821 - 14707
2887
ENSAPLT00000032963
11821 - 16185
4365
ENSAPLT00000027165
4130 - 16730
12601