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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_13696_13780_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13696 - 13780
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
CCCCCACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
GGTGCCGTCACC
Flanking Amino Acid:
RAFAMEDQQAGLYCAEAERS
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.1
43
Major BPS
50
0
1.2
54.6
40.8
Major PPT
64.8
0.33
0.8
56.8
25.9
Minor 5ss
26.7
-2.7
2.9
23.8
36.7
Minor BPS
45.4
-0.3
2.4
59.5
45.4

Associated Gene:

Gene:
ABCB8
Ensembl Gene ID:
ENSAPLG00000022316
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032963
11821 - 16185
4365
ENSAPLT00000021954
13403 - 15014
1612
ENSAPLT00000041404
13052 - 18149
5098
ENSAPLT00000033034
11821 - 14707
2887