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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_13867_13955_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13867 - 13955
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCCC
5'SS Class:
major
3'SS Sequence:
CCTCTCGGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GCCCTCTCCATG
Flanking Amino Acid:
RSLSRRAQEQVAKATGVADE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.1
41.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
70.2
0.45
1
64.4
36.6
Minor 5ss
38.5
-1.3
3.1
51.7
45
Minor BPS
40.1
-0.9
1.8
36.72
39.8

Associated Gene:

Gene:
ABCB8
Ensembl Gene ID:
ENSAPLG00000022316
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041404
13052 - 18149
5098
ENSAPLT00000033034
11821 - 14707
2887
ENSAPLT00000032963
11821 - 16185
4365
ENSAPLT00000021954
13403 - 15014
1612