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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_14118_14181_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14118 - 14181
Intron Length:
64

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CCGTTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
AGTGCCTGACCC
Flanking Amino Acid:
KSSFKLIISQGLRSSTQAAG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
74.2
0.55
0.8
68.8
31.7
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
49.7
-0
1.9
62.52
42.6

Associated Gene:

Gene:
ABCB8
Ensembl Gene ID:
ENSAPLG00000022316
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032963
11821 - 16185
4365
ENSAPLT00000027165
4130 - 16730
12601
ENSAPLT00000021954
13403 - 15014
1612
ENSAPLT00000041404
13052 - 18149
5098
ENSAPLT00000033034
11821 - 14707
2887