Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_14288_14379_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14288 - 14379

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAGGGCAC

5'SS Class:

major

3'SS Sequence:

TGCTGTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCGCAG

U12 Branch Point Sequence:

CCCGGCCCACCC

Flanking Amino Acid:

MRKALFISLLRQDVAFYDAN

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

55.2

43.9

Major BPS

41.4

-0.5

1.7

51.1

46.3

Major PPT

71.9

0.49

0.9

65.5

36.1

Minor 5ss

30.1

-2.3

3.5

41.6

45.3

Minor BPS

-1.3

2.1

34.17

41.9

Associated Gene:

Gene:

ABCB8

Ensembl Gene ID:

ENSAPLG00000022316

Chromosome:

PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027165

4130 - 16730

12601

ENSAPLT00000021954

13403 - 15014

1612

ENSAPLT00000041404

13052 - 18149

5098

ENSAPLT00000033034

11821 - 14707

2887

ENSAPLT00000032963

11821 - 16185

4365