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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_14475_14551_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14475 - 14551
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
TCGTTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCGAG
U12 Branch Point Sequence:
CCGTCCCGAGCC
Flanking Amino Acid:
LRLLGLYCLQGLLTFGYIAL
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
43
-0.4
1.6
40.1
42
Major PPT
78.1
0.63
0.8
73.3
31.7
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
44
-0.4
2
51.75
45.2

Associated Gene:

Gene:
ABCB8
Ensembl Gene ID:
ENSAPLG00000022316
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041404
13052 - 18149
5098
ENSAPLT00000033034
11821 - 14707
2887
ENSAPLT00000032963
11821 - 16185
4365