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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_14708_14796_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14708 - 14796
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CCCCATCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GTCCCGCTGACG
Flanking Amino Acid:
QLLALSAAVVLALGAALLNV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
67.6
0.4
0.8
60.8
28.9
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
42.4
-0.7
2.3
49.82
43.9

Associated Gene:

Gene:
ABCB8
Ensembl Gene ID:
ENSAPLG00000022316
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032963
11821 - 16185
4365
ENSAPLT00000027165
4130 - 16730
12601
ENSAPLT00000021954
13403 - 15014
1612
ENSAPLT00000041404
13052 - 18149
5098