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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_17620_17713_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
17620 - 17713
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
AAG|ATATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
ACGCGTGCCCAAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CATTCCTTAACG
Flanking Amino Acid:
IKNLDNFFTKIYHFHQKNGF
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
37.5
-0.7
3.5
53.2
46.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
30.6
-1.1
3
33.2
35.3
Minor 5ss
89.2
1.3
1.3
90.9
28.7
Minor BPS
81
0.84
1.3
76.7
40.6

Associated Gene:

Gene:
ATG9B
Ensembl Gene ID:
ENSAPLG00000004233
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004332
15090 - 21533
6444