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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_19107_19208_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19107 - 19208
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CCCTGCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGACGCCCACCC
Flanking Amino Acid:
TLLGLVVTLARSFIPDEHMV
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
69.1
0.43
0.8
65
30.7
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
36.7
-1
2.2
46.87
41.5

Associated Gene:

Gene:
ATG9B
Ensembl Gene ID:
ENSAPLG00000004233
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004332
15090 - 21533
6444