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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_19621_19696_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19621 - 19696
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CGCTCCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TACCCCCCAGCT
Flanking Amino Acid:
LDIRNHGNPQWLSAGQTEAS
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.6
0.42
0.8
61.6
29
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.8
-0.3
2
64.3
45.2

Associated Gene:

Gene:
ATG9B
Ensembl Gene ID:
ENSAPLG00000004233
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004332
15090 - 21533
6444