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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_19943_20079_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19943 - 20079
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GGTGTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGGCTCTAACC
Flanking Amino Acid:
SLLSDDSATAPDGLLASVLA
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
69.2
0.43
0.9
62
39.9
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
52.7
0.06
1.8
63.47
42.2

Associated Gene:

Gene:
ATG9B
Ensembl Gene ID:
ENSAPLG00000004233
Chromosome:
PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004332
15090 - 21533
6444