Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000315.1_2060_2705_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2060 - 2705

Intron Length:

646

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGGGTGGG

5'SS Class:

weak_major

3'SS Sequence:

CTCGTGCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAA

U12 Branch Point Sequence:

CCCCCCCCAACT

Flanking Amino Acid:

PSLAPSTRRASACHPLRSHA

Intron Amino Acid Position:

467

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.07

1.4

45.3

44.7

Major BPS

45.3

-0.2

1.2

35.2

Major PPT

68.2

0.41

0.9

61.2

35.1

Minor 5ss

27.1

-2.6

3.3

34.6

Minor BPS

47.2

-0.1

1.9

62.31

47.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024227

Chromosome:

PEDO01000315.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019411

1955 - 7678

5724