Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000342.1_145_213_F

Intron Information:

Intron Rank:

124608

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

145 - 213

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CACGACGCCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

ATGACGTCATCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

68.4

36.9

Major BPS

71.2

0.53

37.5

Major PPT

55.1

0.12

46.2

35.9

Minor 5ss

27.7

-2.6

31.6

37.6

Minor BPS

41.9

-0.6

2.3

54.78

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017180

Chromosome:

PEDO01000342.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022885

21 - 1128

1108