Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000342.1_307_395_F

Intron Information:

Intron Rank:

124609

Intron Class:

major

Intron Phase:

Intron Coordinates:

307 - 395

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACGTCA

5'SS Class:

major

3'SS Sequence:

CCCGCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACGTCAT

U12 Branch Point Sequence:

CTGACGTCATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

65.4

36.9

Major BPS

63.4

0.33

1.2

65.3

41.5

Major PPT

63.9

0.31

0.8

53.5

31.1

Minor 5ss

37.1

-1.5

3.2

47.9

47.8

Minor BPS

41.9

-0.5

2.4

60.58

48.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017180

Chromosome:

PEDO01000342.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022885

21 - 1128

1108