Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000408.1_4146_4255_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4146 - 4255

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGTCT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAG

U12 Branch Point Sequence:

GCTGCTTCAGCT

Flanking Amino Acid:

LLRLLTSCYVGPTRQQFVPS

Intron Amino Acid Position:

1230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.1

38.8

Major BPS

48.3

-0.1

1.7

59.3

47.1

Major PPT

65.5

0.35

1.1

39.9

Minor 5ss

38.9

-1.2

3.3

48.7

Minor BPS

47.7

-0

1.9

64.55

Associated Gene:

Gene:

WDR81

Ensembl Gene ID:

ENSAPLG00000011150

Chromosome:

PEDO01000408.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011605

21 - 10441

10421

ENSAPLT00000045699

21 - 10350

10330