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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000423.1_3213_3435_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3213 - 3435
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CCCGTGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTTTTTCACC
Flanking Amino Acid:
LWSLGTLQQEGSADKAGLAY
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.8
0.42
0.9
61
35.2
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
55.3
0.15
1.8
64.7
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006182
Chromosome:
PEDO01000423.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006437
79 - 3964
3886