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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000461.1_2935_3657_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2935 - 3657
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGTGGGT
5'SS Class:
weak_major
3'SS Sequence:
TCACCTTCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAA
U12 Branch Point Sequence:
TTCACCTTCAGC
Flanking Amino Acid:
ASGFTFSSYYIVGMVWLEHA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.1
49.7
41
Major BPS
57
0.18
1.3
69.4
37.7
Major PPT
70.5
0.46
0.9
66.4
34
Minor 5ss
26.6
-2.7
3.8
40.9
46
Minor BPS
51.6
0.03
2.1
66.76
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020955
Chromosome:
PEDO01000461.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030004
560 - 4111
3552