About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000461.1_575_2851_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
575 - 2851
Intron Length:
2277

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCTTGCAG
5'SS Class:
major
3'SS Sequence:
CACCTTGGATGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
CCACCTTGGATG
Flanking Amino Acid:
KVKPESGGGLVSPGR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
43
44.3
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
44.9
-0.2
1.7
50.2
42.5
Minor 5ss
21.3
-3.3
3.8
29.6
43.2
Minor BPS
44.7
-0.5
1.5
40.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020955
Chromosome:
PEDO01000461.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030004
560 - 4111
3552