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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000468.1_1396_1478_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1396 - 1478
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
GCCTCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GTCCCCACACCC
Flanking Amino Acid:
MERLPVDLQYLP
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
56.9
42.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
73.2
0.52
0.8
64.7
36.5
Minor 5ss
32
-2.1
3.3
37.7
41.5
Minor BPS
43.2
-0.5
2
54.21
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009481
Chromosome:
PEDO01000468.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022167
918 - 2362
1445
ENSAPLT00000009871
21 - 2362
2342